PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10021860m
Common NameCARUB_v10021860mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family WRKY
Protein Properties Length: 228aa    MW: 26453.8 Da    PI: 5.6051
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10021860mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY68.41e-2190150259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                      dDg++WrKYGqK++k+s + r YYrCt+a   +C+++k+v++ +++p v  +tY  +H ++
  Carubv10021860m  90 DDGFTWRKYGQKPIKDSLHQRCYYRCTYAkdrNCNATKRVQKIQDNPPVYRTTYLRKHVCK 150
                      8***************************99999*************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081118.31584147IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.4E-2385150IPR003657WRKY domain
SuperFamilySSF1182902.75E-2287150IPR003657WRKY domain
SMARTSM007749.3E-3289151IPR003657WRKY domain
PfamPF031067.4E-2290150IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MFSRIDHKAV EALLHGQGCA NNLKMLLENR EIGLVWTEPL LNSILDSFSL VLSSFQNMGG  60
HVSERSSKKK ICGIEGIESY RDESPTPRPD DGFTWRKYGQ KPIKDSLHQR CYYRCTYAKD  120
RNCNATKRVQ KIQDNPPVYR TTYLRKHVCK DFAVHDDTYG SEMIQFDQVV SKQVMPQLTT  180
MNHQAITMEE EDTYNIQECD INDYLVDDDQ FWANQFPPFP SEDPMFF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006301442.11e-174hypothetical protein CARUB_v10021860mg
SwissprotQ9C5571e-118WRK64_ARATH; Probable WRKY transcription factor 64
TrEMBLR0I8A61e-174R0I8A6_9BRAS; Uncharacterized protein
STRINGAT1G66560.11e-116(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56091847
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66550.21e-119WRKY DNA-binding protein 67